PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0756s0011.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 191aa    MW: 21459.6 Da    PI: 10.0847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0756s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536e-1792181198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k+++ps+v+   +l l  +f+++h  +  ++ ++tl de+ +++   +    ++ +  l++GWk+F+ a+gL +gD +vF+l++ + f
  Kaladp0756s0011.1.p  92 FVKTMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LSGGWKGFAVAHGLTDGDALVFQLIKPTAF 175
                          89************************533..5569***************..555544..************************997888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v + r
  Kaladp0756s0011.1.p 176 --KVYITR 181
                          ..776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-2485184IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-2285183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-2690181No hitNo description
PfamPF023629.5E-1592181IPR003340B3 DNA binding domain
SMARTSM010191.5E-2392183IPR003340B3 DNA binding domain
PROSITE profilePS5086311.56192183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MFHGCLQMKQ RKPRTVEKKM VPVRRSDRLS DKPGPVYLEV DVARYDRVTI PRRVSKARDL  60
SNRVYASEEE RSYSIKKAEE VQAALDATHP SFVKTMLPSH VSGGFWLGLN VSFCKRHLPN  120
RDSEVTLIDE DDEEYPTVYL PRKTGLSGGW KGFAVAHGLT DGDALVFQLI KPTAFKVYIT  180
RASGFKKTAA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520114.12e-81PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ46e-59Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A0D2QCC61e-77A0A0D2QCC6_G
TrEMBLV4V7F61e-77V4V7F6_9R
STRINGGLYMA04G04030.16e-73(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-60B3 family protein